Detailed information of SNP:
|
SNP ID:
sf0727092356(Gbrowse)
Chromosome: chr07 Position: 27092356 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 80.30% | 19.70% |
| All Indica | 796 | 69.10% | 30.90% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 49.60% | 50.40% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727092356 | A->G | LOC_Os07g45410(LOC_Os07g45410.1) | INTRON |