Detailed information of SNP:
|
SNP ID:
sf0727100416(Gbrowse)
Chromosome: chr07 Position: 27100416 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 97.43% | 2.57% |
| All Indica | 780 | 95.38% | 4.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 95.30% | 4.70% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727100416 | G->A | LOC_Os07g45430(LOC_Os07g45430.1) | INTRON |