Detailed information of SNP:
|
SNP ID:
sf0727109540(Gbrowse)
Chromosome: chr07 Position: 27109540 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 57.31% | 42.69% |
| All Indica | 776 | 36.47% | 63.53% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 361 | 27.70% | 72.30% |
| Indica II | 210 | 33.33% | 66.67% |
| Indica Intermediate | 205 | 55.12% | 44.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727109540 | A->G | LOC_Os07g45450(LOC_Os07g45450.1) | INTRON |