Detailed information of SNP:
|
SNP ID:
sf0727125266(Gbrowse)
Chromosome: chr07 Position: 27125266 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1269 | 52.96% | 47.04% |
| All Indica | 773 | 45.02% | 54.98% |
| All Japonica | 377 | 74.27% | 25.73% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 366 | 59.29% | 40.71% |
| Indica II | 211 | 17.06% | 82.94% |
| Indica Intermediate | 196 | 48.47% | 51.53% |
| Temperate Japonica | 252 | 69.05% | 30.95% |
| Tropical Japonica | 71 | 91.55% | 8.45% |
| Japonica Intermediate | 54 | 75.93% | 24.07% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 36.84% | 63.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727125266 | T->A | INTERGENIC | None |