Detailed information of SNP:
|
SNP ID:
sf0727130491(Gbrowse)
Chromosome: chr07 Position: 27130491 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 90.79% | 9.21% |
| All Indica | 790 | 99.62% | 0.38% |
| All Japonica | 423 | 73.05% | 26.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 285 | 66.32% | 33.68% |
| Tropical Japonica | 77 | 96.10% | 3.90% |
| Japonica Intermediate | 61 | 75.41% | 24.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727130491 | A->G | INTERGENIC | None |