Detailed information of SNP:
|
SNP ID:
sf0727170710(Gbrowse)
Chromosome: chr07 Position: 27170710 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.88% | 44.12% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727170710 | T->G | INTERGENIC | None |