Detailed information of SNP:
|
SNP ID:
sf0727205102(Gbrowse)
Chromosome: chr07 Position: 27205102 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 96.70% | 3.30% |
| All Indica | 778 | 95.76% | 4.24% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 204 | 92.16% | 7.84% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727205102 | A->T | LOC_Os07g45580(LOC_Os07g45580.1) | Synonymous |