Detailed information of SNP:
|
SNP ID:
sf0727209172(Gbrowse)
Chromosome: chr07 Position: 27209172 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 94.25% | 5.75% |
| All Indica | 775 | 92.39% | 7.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 367 | 98.37% | 1.63% |
| Indica II | 202 | 82.18% | 17.82% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727209172 | C->T | LOC_Os07g45590(LOC_Os07g45590.1) | Non-Synonymous SNP |