Detailed information of SNP:
|
SNP ID:
sf0727216194(Gbrowse)
Chromosome: chr07 Position: 27216194 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 90.86% | 9.14% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 462 | 74.46% | 25.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 68.79% | 31.21% |
| Tropical Japonica | 84 | 95.24% | 4.76% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727216194 | A->C | LOC_Os07g45610(LOC_Os07g45610.1) | INTRON |