Detailed information of SNP:
|
SNP ID:
sf0727253960(Gbrowse)
Chromosome: chr07 Position: 27253960 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1198 | 88.48% | 11.52% |
| All Indica | 619 | 80.61% | 19.39% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 43 | 72.09% | 27.91% |
| Indica I | 295 | 78.98% | 21.02% |
| Indica II | 158 | 82.91% | 17.09% |
| Indica Intermediate | 166 | 81.33% | 18.67% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 31 | 96.77% | 3.23% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727253960 | G->A | INTERGENIC | None |