Detailed information of SNP:
|
SNP ID:
sf0727262967(Gbrowse)
Chromosome: chr07 Position: 27262967 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 50.40% | 49.60% |
| All Indica | 774 | 77.39% | 22.61% |
| All Japonica | 491 | 2.24% | 97.76% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 367 | 84.20% | 15.80% |
| Indica II | 203 | 88.18% | 11.82% |
| Indica Intermediate | 204 | 54.41% | 45.59% |
| Temperate Japonica | 330 | 1.21% | 98.79% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727262967 | G->T | LOC_Os07g45660(LOC_Os07g45660.1) | Non-Synonymous SNP |