Detailed information of SNP:
|
SNP ID:
sf0727263591(Gbrowse)
Chromosome: chr07 Position: 27263591 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 92.76% | 7.24% |
| All Indica | 786 | 99.75% | 0.25% |
| All Japonica | 421 | 79.10% | 20.90% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 202 | 99.50% | 0.50% |
| Temperate Japonica | 280 | 73.93% | 26.07% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 58 | 79.31% | 20.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727263591 | T->C | LOC_Os07g45660(LOC_Os07g45660.1) | Non-Synonymous SNP |