Detailed information of SNP:
|
SNP ID:
sf0727264573(Gbrowse)
Chromosome: chr07 Position: 27264573 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 51.16% | 48.84% |
| All Indica | 768 | 75.39% | 24.61% |
| All Japonica | 497 | 10.26% | 89.74% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 359 | 82.45% | 17.55% |
| Indica II | 203 | 86.70% | 13.30% |
| Indica Intermediate | 206 | 51.94% | 48.06% |
| Temperate Japonica | 335 | 11.04% | 88.96% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727264573 | C->T | INTERGENIC | None |