Detailed information of SNP:
|
SNP ID:
sf0727271388(Gbrowse)
Chromosome: chr07 Position: 27271388 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 62.32% | 37.68% |
| All Indica | 751 | 43.94% | 56.06% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 62 | 19.35% | 80.65% |
| Indica I | 357 | 31.37% | 68.63% |
| Indica II | 190 | 51.05% | 48.95% |
| Indica Intermediate | 204 | 59.31% | 40.69% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727271388 | T->C | INTERGENIC | None |