Detailed information of SNP:
|
SNP ID:
sf0727276284(Gbrowse)
Chromosome: chr07 Position: 27276284 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 90.64% | 9.36% |
| All Indica | 699 | 88.27% | 11.73% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 60 | 65.00% | 35.00% |
| Indica I | 320 | 89.69% | 10.31% |
| Indica II | 186 | 87.10% | 12.90% |
| Indica Intermediate | 193 | 87.05% | 12.95% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727276284 | C->T | LOC_Os07g45680(LOC_Os07g45680.1) | Synonymous |