Detailed information of SNP:
SNP ID:
sf0727276590(Gbrowse)
Chromosome: chr07 Position: 27276590 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1412 | 97.95% | 2.05% |
All Indica | 793 | 97.35% | 2.65% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 66 | 87.88% | 12.12% |
Indica I | 371 | 97.30% | 2.70% |
Indica II | 212 | 97.64% | 2.36% |
Indica Intermediate | 210 | 97.14% | 2.86% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0727276590 | C->T | LOC_Os07g45680(LOC_Os07g45680.1) | Synonymous |