Detailed information of SNP:
|
SNP ID:
sf0727277544(Gbrowse)
Chromosome: chr07 Position: 27277544 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1217 | 78.39% | 21.61% |
| All Indica | 642 | 68.07% | 31.93% |
| All Japonica | 491 | 95.93% | 4.07% |
| Aus | 42 | 30.95% | 69.05% |
| Indica I | 296 | 69.59% | 30.41% |
| Indica II | 161 | 61.49% | 38.51% |
| Indica Intermediate | 185 | 71.35% | 28.65% |
| Temperate Japonica | 330 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 31 | 90.32% | 9.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727277544 | C->T | LOC_Os07g45680(LOC_Os07g45680.1) | Synonymous |