Detailed information of SNP:
|
SNP ID:
sf0727323853(Gbrowse)
Chromosome: chr07 Position: 27323853 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 77.14% | 22.86% |
| All Indica | 793 | 67.09% | 32.91% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 371 | 48.52% | 51.48% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727323853 | A->T | LOC_Os07g45770(LOC_Os07g45770.1) | Synonymous |