Detailed information of SNP:
|
SNP ID:
sf0727475097(Gbrowse)
Chromosome: chr07 Position: 27475097 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 54.10% | 45.90% |
| All Indica | 794 | 83.00% | 17.00% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727475097 | G->A | LOC_Os07g46039(LOC_Os07g46039.2) | UTR_3_PRIME |
| sf0727475097 | G->A | LOC_Os07g46039(LOC_Os07g46039.1) | UTR_3_PRIME |