Detailed information of SNP:
|
SNP ID:
sf0727483372(Gbrowse)
Chromosome: chr07 Position: 27483372 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1277 | 98.43% | 1.57% |
| All Indica | 762 | 100.00% | 0.00% |
| All Japonica | 394 | 95.43% | 4.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 179 | 100.00% | 0.00% |
| Temperate Japonica | 260 | 99.62% | 0.38% |
| Tropical Japonica | 75 | 86.67% | 13.33% |
| Japonica Intermediate | 59 | 88.14% | 11.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727483372 | G->A | INTERGENIC | None |