Detailed information of SNP:
|
SNP ID:
sf0727491915(Gbrowse)
Chromosome: chr07 Position: 27491915 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1252 | 65.50% | 34.50% |
| All Indica | 655 | 39.08% | 60.92% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 58 | 65.52% | 34.48% |
| Indica I | 296 | 29.05% | 70.95% |
| Indica II | 176 | 38.64% | 61.36% |
| Indica Intermediate | 183 | 55.74% | 44.26% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 6 | 66.67% | 33.33% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727491915 | C->T | INTERGENIC | None |