Detailed information of SNP:
|
SNP ID:
sf0727497094(Gbrowse)
Chromosome: chr07 Position: 27497094 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 73.19% | 26.81% |
| All Indica | 791 | 56.51% | 43.49% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 371 | 65.50% | 34.50% |
| Indica II | 211 | 34.60% | 65.40% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727497094 | C->T | INTERGENIC | None |