Detailed information of SNP:
|
SNP ID:
sf0727500378(Gbrowse)
Chromosome: chr07 Position: 27500378 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 81.17% | 18.83% |
| All Indica | 780 | 91.79% | 8.21% |
| All Japonica | 464 | 59.48% | 40.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 194 | 75.26% | 24.74% |
| Temperate Japonica | 315 | 67.30% | 32.70% |
| Tropical Japonica | 85 | 37.65% | 62.35% |
| Japonica Intermediate | 64 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727500378 | G->A | INTERGENIC | None |