Detailed information of SNP:
|
SNP ID:
sf0727502961(Gbrowse)
Chromosome: chr07 Position: 27502961 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.88% | 25.12% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 496 | 48.59% | 51.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 58.21% | 41.79% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727502961 | C->T | LOC_Os07g46080(LOC_Os07g46080.1) | INTRON |