Detailed information of SNP:
|
SNP ID:
sf0727504206(Gbrowse)
Chromosome: chr07 Position: 27504206 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.15% | 29.85% |
| All Indica | 797 | 84.07% | 15.93% |
| All Japonica | 497 | 48.29% | 51.71% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727504206 | A->G | LOC_Os07g46080(LOC_Os07g46080.1) | Synonymous |