Detailed information of SNP:
|
SNP ID:
sf0727510792(Gbrowse)
Chromosome: chr07 Position: 27510792 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 71.69% | 28.31% |
| All Indica | 796 | 54.77% | 45.23% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 64.97% | 35.03% |
| Indica II | 211 | 32.70% | 67.30% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727510792 | A->T | LOC_Os07g46090(LOC_Os07g46090.1) | Synonymous |