Detailed information of SNP:
|
SNP ID:
sf0727515824(Gbrowse)
Chromosome: chr07 Position: 27515824 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 58.13% | 41.87% |
| All Indica | 783 | 41.00% | 59.00% |
| All Japonica | 496 | 88.10% | 11.90% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 367 | 55.59% | 44.41% |
| Indica II | 210 | 16.19% | 83.81% |
| Indica Intermediate | 206 | 40.29% | 59.71% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727515824 | G->A | INTERGENIC | None |