Detailed information of SNP:
|
SNP ID:
sf0727528180(Gbrowse)
Chromosome: chr07 Position: 27528180 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 61.91% | 38.09% |
| All Indica | 787 | 43.20% | 56.80% |
| All Japonica | 494 | 92.31% | 7.69% |
| Aus | 66 | 43.94% | 56.06% |
| Indica I | 368 | 57.07% | 42.93% |
| Indica II | 211 | 17.06% | 82.94% |
| Indica Intermediate | 208 | 45.19% | 54.81% |
| Temperate Japonica | 334 | 96.41% | 3.59% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727528180 | T->G | LOC_Os07g46130(LOC_Os07g46130.1) | INTRON |