Detailed information of SNP:
|
SNP ID:
sf0727528855(Gbrowse)
Chromosome: chr07 Position: 27528855 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 70.29% | 29.71% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 489 | 48.06% | 51.94% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 56.19% | 43.81% |
| Temperate Japonica | 334 | 59.28% | 40.72% |
| Tropical Japonica | 88 | 11.36% | 88.64% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727528855 | T->C | LOC_Os07g46130(LOC_Os07g46130.1) | INTRON |