Detailed information of SNP:
|
SNP ID:
sf0727530121(Gbrowse)
Chromosome: chr07 Position: 27530121 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.41% | 31.59% |
| All Indica | 799 | 82.73% | 17.27% |
| All Japonica | 496 | 44.96% | 55.04% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727530121 | C->T | LOC_Os07g46130(LOC_Os07g46130.1) | Synonymous |