Detailed information of SNP:
|
SNP ID:
sf0727545019(Gbrowse)
Chromosome: chr07 Position: 27545019 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.81% | 28.19% |
| All Indica | 799 | 87.73% | 12.27% |
| All Japonica | 497 | 46.28% | 53.72% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727545019 | G->T | LOC_Os07g46160(LOC_Os07g46160.1) | Synonymous |