Detailed information of SNP:
|
SNP ID:
sf0727547430(Gbrowse)
Chromosome: chr07 Position: 27547430 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.89% | 34.11% |
| All Indica | 799 | 81.48% | 18.52% |
| All Japonica | 497 | 44.27% | 55.73% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727547430 | A->T | LOC_Os07g46160(LOC_Os07g46160.1) | INTRON |