Detailed information of SNP:
|
SNP ID:
sf0727549691(Gbrowse)
Chromosome: chr07 Position: 27549691 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 798 | 50.38% | 49.62% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 43.28% | 56.72% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727549691 | C->G | INTERGENIC | None |