Detailed information of SNP:
|
SNP ID:
sf0727573402(Gbrowse)
Chromosome: chr07 Position: 27573402 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 79.30% | 20.70% |
| All Indica | 780 | 96.28% | 3.72% |
| All Japonica | 482 | 48.76% | 51.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 200 | 88.00% | 12.00% |
| Temperate Japonica | 329 | 57.45% | 42.55% |
| Tropical Japonica | 88 | 21.59% | 78.41% |
| Japonica Intermediate | 65 | 41.54% | 58.46% |
| Group VI/Aromatic | 4 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727573402 | C->T | LOC_Os07g46200(LOC_Os07g46200.1) | Non-Synonymous SNP |