Detailed information of SNP:
|
SNP ID:
sf0727583314(Gbrowse)
Chromosome: chr07 Position: 27583314 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 81.47% | 18.53% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727583314 | G->A | INTERGENIC | None |