Detailed information of SNP:
|
SNP ID:
sf0727587203(Gbrowse)
Chromosome: chr07 Position: 27587203 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.53% | 38.47% |
| All Indica | 795 | 66.92% | 33.08% |
| All Japonica | 496 | 55.85% | 44.15% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 373 | 42.63% | 57.37% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 43.88% | 56.12% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727587203 | G->A | INTERGENIC | None |