Detailed information of SNP:
|
SNP ID:
sf0727588354(Gbrowse)
Chromosome: chr07 Position: 27588354 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.71% | 26.29% |
| All Indica | 795 | 87.67% | 12.33% |
| All Japonica | 497 | 46.68% | 53.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727588354 | G->A | INTERGENIC | None |