Detailed information of SNP:
|
SNP ID:
sf0727593853(Gbrowse)
Chromosome: chr07 Position: 27593853 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.43% | 40.57% |
| All Indica | 795 | 44.15% | 55.85% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 59.63% | 40.37% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727593853 | A->C | INTERGENIC | None |