Detailed information of SNP:
|
SNP ID:
sf0727595689(Gbrowse)
Chromosome: chr07 Position: 27595689 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.39% | 19.61% |
| All Indica | 798 | 69.92% | 30.08% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 374 | 47.33% | 52.67% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727595689 | G->A | INTERGENIC | None |