Detailed information of SNP:
|
SNP ID:
sf0727595849(Gbrowse)
Chromosome: chr07 Position: 27595849 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 52.65% | 47.35% |
| All Indica | 793 | 49.31% | 50.69% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 373 | 57.91% | 42.09% |
| Indica II | 211 | 25.59% | 74.41% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727595849 | G->T | INTERGENIC | None |