Detailed information of SNP:
|
SNP ID:
sf0727612791(Gbrowse)
Chromosome: chr07 Position: 27612791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.53% | 33.47% |
| All Indica | 796 | 48.87% | 51.13% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 62.40% | 37.60% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 208 | 54.81% | 45.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727612791 | C->T | INTERGENIC | None |