Detailed information of SNP:
|
SNP ID:
sf0727613626(Gbrowse)
Chromosome: chr07 Position: 27613626 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 68.15% | 31.85% |
| All Indica | 794 | 50.38% | 49.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 211 | 22.27% | 77.73% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727613626 | A->G | INTERGENIC | None |