Detailed information of SNP:
|
SNP ID:
sf0727613846(Gbrowse)
Chromosome: chr07 Position: 27613846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.91% | 37.09% |
| All Indica | 798 | 45.49% | 54.51% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 13.62% | 86.38% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727613846 | G->A | INTERGENIC | None |