Detailed information of SNP:
|
SNP ID:
sf0727614016(Gbrowse)
Chromosome: chr07 Position: 27614016 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 62.08% | 37.92% |
| All Indica | 797 | 44.67% | 55.33% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727614016 | T->C | INTERGENIC | None |