Detailed information of SNP:
|
SNP ID:
sf0727627083(Gbrowse)
Chromosome: chr07 Position: 27627083 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 63.82% | 36.18% |
| All Indica | 793 | 87.89% | 12.11% |
| All Japonica | 445 | 18.88% | 81.12% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 291 | 23.37% | 76.63% |
| Tropical Japonica | 92 | 11.96% | 88.04% |
| Japonica Intermediate | 62 | 8.06% | 91.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727627083 | A->G | INTERGENIC | None |