Detailed information of SNP:
|
SNP ID:
sf0727644226(Gbrowse)
Chromosome: chr07 Position: 27644226 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 93.56% | 6.44% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 422 | 80.81% | 19.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 320 | 91.88% | 8.13% |
| Tropical Japonica | 55 | 34.55% | 65.45% |
| Japonica Intermediate | 47 | 59.57% | 40.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727644226 | A->C | INTERGENIC | None |