Detailed information of SNP:
|
SNP ID:
sf0727648755(Gbrowse)
Chromosome: chr07 Position: 27648755 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.52% | 27.48% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 41.85% | 58.15% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727648755 | T->G | INTERGENIC | None |