Detailed information of SNP:
|
SNP ID:
sf0727727529(Gbrowse)
Chromosome: chr07 Position: 27727529 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.42% | 46.58% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727727529 | C->A | LOC_Os07g46460(LOC_Os07g46460.1) | INTRON |