Detailed information of SNP:
|
SNP ID:
sf0727744944(Gbrowse)
Chromosome: chr07 Position: 27744944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 89.74% | 10.26% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 455 | 80.66% | 19.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 314 | 72.29% | 27.71% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727744944 | C->T | INTERGENIC | None |