Detailed information of SNP:
|
SNP ID:
sf0727785947(Gbrowse)
Chromosome: chr07 Position: 27785947 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.43% | 46.57% |
| All Indica | 796 | 88.44% | 11.56% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0727785947 | C->T | INTERGENIC | None |